JeUtils
JeUtils is an open source command-line utility to access the National Institute of Biotechnology Information (NCBI) databases. The purpose of JeUtils is to allow for automation of queries to NCBI via their eUtils API and their BLAST sequence search services. JEutils download is accompanied by the source code, binary files to run JEutils, and the java documentation for all classes within the software.
Download JeUtils - Download the source, binaries, and documentation as a zip compressed file.
JeUtils can be used to search NCBI databases.
JeUtils can be used to run a BLAST alignment at NCBI using Java.