Molecular Biology Software

Requirements

Genecoder molecular biology software is platform independent and only requires Java^TM 1.6 or later.

Whats New

Multiple Sequence Alignment
Align Sanger Trace Files
Command line utilities

additional LINKs

Program Features

Sequence Database
Support for a large array of sequence file formats (default: Genbank)
Dynamic Restriction Site Analysis of DNA sequences
Editable Restriction Enzyme Library
Highlight, select, analyze, and save regions of interest
Create Linear and Circular Restriction Maps
Pairwise and multiple sequence alignments.
Plugin API to extend tools, views, and readable file formats.
Comprehensive preferences
Remote NCBI BLAST and Entrez Queries and downloads
View and analyze DNA sequence trace chromatagrams
Search for common sequences from an editable database of sequences
Analyze oligonucleotides for PCR and/or siRNA
And much more...

GeneCoder 4.0

GeneCoder 4.0 is a major update to GeneCoder 3.0, and is currently being beta testing by a select group of Molecular Biologists. The new version has faster performance, support, and added features. If you care to be a tester or contributor, please contact Greg Cope. GeneCoder 4.0 requires Java Runtime 1.6 or later.

Features

Sequence display and restriction site analysis

GeneCoder 4.0 contains all the features from Genecoder 3.0 Plus:

Plugin Capability - with access to the Java API, you can write your own sequence analysis tools, share, and or download tools as they become available.
Database file list - all files organizes as you desire, collected into a single repository with an easy access panel.
Genbank Default File Format - share files amonst colleagues and programs with this standard sequence file format.
View multiple sequences in a tabular format for easy sequence manipulation.
Sequence Lists - analyze or manipulate multiple sequences all at one time.
One click toolbox - all tools and plugins available in a single panel.
Add key/value pair data to Regions
And much more...